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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11699482_11706114_R

Intron Information:

Intron Rank:
148844
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
11699482 - 11706114
Intron Length:
6633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CAAATAAATATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTCTCCCAAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
52.8
0.06
1
44.8
40.1
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
55.5
0.17
2
71.63
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027549
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035746
11698598 - 11714139
15542