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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11704170_11706114_R

Intron Information:

Intron Rank:
148837
Intron Class:
major
Intron Phase:
Intron Coordinates:
11704170 - 11706114
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CAATCTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TACCAGTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
79.9
0.67
0.9
76.9
36.7
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
48.4
-0.1
2.2
62.15
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027549
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033430
11703894 - 11710214
6321
ENSAPLT00000020634
11703894 - 11710214
6321