About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11706280_11708328_R

Intron Information:

Intron Rank:
148838
Intron Class:
major
Intron Phase:
Intron Coordinates:
11706280 - 11708328
Intron Length:
2049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTCCTTTGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
77.9
38.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.3
0.68
0.8
73.7
36.7
Minor 5ss
39.5
-1.2
3.2
55.8
48.4
Minor BPS
70.2
0.72
1.4
85.92
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027549
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020634
11703894 - 11710214
6321
ENSAPLT00000035746
11698598 - 11714139
15542
ENSAPLT00000033430
11703894 - 11710214
6321