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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11708493_11709489_R

Intron Information:

Intron Rank:
148839
Intron Class:
major
Intron Phase:
Intron Coordinates:
11708493 - 11709489
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
76.6
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
44.5
-0.6
3.1
61.3
44.6
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027549
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035746
11698598 - 11714139
15542
ENSAPLT00000033430
11703894 - 11710214
6321
ENSAPLT00000020634
11703894 - 11710214
6321