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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11724189_11725145_R

Intron Information:

Intron Rank:
143834
Intron Class:
major
Intron Phase:
Intron Coordinates:
11724189 - 11725145
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGGTTT
5'SS Class:
major
3'SS Sequence:
TGCTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TACTAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
72.8
38.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82.4
0.73
0.8
76.5
32
Minor 5ss
45.6
-0.5
3.4
74.4
41.8
Minor BPS
53.5
0.19
1.9
73.18
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024694
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047341
11722421 - 11748560
26140
ENSAPLT00000027057
11722409 - 11725248
2840