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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11725313_11729119_R

Intron Information:

Intron Rank:
143838
Intron Class:
major
Intron Phase:
Intron Coordinates:
11725313 - 11729119
Intron Length:
3807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTGTGTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
48.5
-0.1
2.4
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024694
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047341
11722421 - 11748560
26140