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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11729238_11748470_R

Intron Information:

Intron Rank:
143839
Intron Class:
major
Intron Phase:
Intron Coordinates:
11729238 - 11748470
Intron Length:
19233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
AATGCTTCTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.5
0.26
1.1
57.5
42.7
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
67.6
0.63
1.3
77.65
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024694
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047341
11722421 - 11748560
26140