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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11748561_11774690_R

Intron Information:

Intron Rank:
143835
Intron Class:
major
Intron Phase:
Intron Coordinates:
11748561 - 11774690
Intron Length:
26130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCGCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTAGTCTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
100
1.24
0.5
100
0
Major PPT
71.7
0.49
0.9
65.3
36.3
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
64.7
0.44
1.4
67.34
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024694
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030583
11748543 - 11775284
26742