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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1177451_1179036_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1177451 - 1179036
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATCATTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATTCAAAAAAT
Flanking Amino Acid:
AVKWIMTELVLFLVEFNLCS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.3
0.57
0.8
70.1
35.7
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
44.9
-0.3
2.2
67.69
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025956
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043972
1155784 - 1183028
27245