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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11788989_11793166_R

Intron Information:

Intron Rank:
154401
Intron Class:
major
Intron Phase:
Intron Coordinates:
11788989 - 11793166
Intron Length:
4178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGCTACTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
85.5
0.8
0.8
84.7
30.2
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
48.7
-0
1.9
71.03
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030607
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034425
11788454 - 11793268
4815