About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11793605_11807087_R

Intron Information:

Intron Rank:
154403
Intron Class:
major
Intron Phase:
Intron Coordinates:
11793605 - 11807087
Intron Length:
13483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTCAGTAAT
5'SS Class:
major
3'SS Sequence:
AACTTCACTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTCTAATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
79.7
35.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
70.9
0.47
0.9
62.9
37.5
Minor 5ss
33
-1.9
2.7
40.1
39.6
Minor BPS
62.1
0.46
1.8
79.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030607
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039940
11793488 - 11807122
13635