About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11829607_11830763_R

Intron Information:

Intron Rank:
135341
Intron Class:
major
Intron Phase:
Intron Coordinates:
11829607 - 11830763
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TTTGACATCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
67.6
0.44
1.2
75
40
Major PPT
88
0.86
0.8
80.5
37
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
47.1
-0.2
2.3
68.34
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020225
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018422
11829472 - 11833981
4510