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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11883868_11887325_R

Intron Information:

Intron Rank:
147178
Intron Class:
major
Intron Phase:
Intron Coordinates:
11883868 - 11887325
Intron Length:
3458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGTAT
U12 Branch Point Sequence:
TTAGTATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
59.8
0.24
1.5
60.1
46.3
Major PPT
85.3
0.79
0.7
78
30.8
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
52.7
0.16
1.8
74.74
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026496
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048220
11882246 - 11897609
15364
ENSAPLT00000043074
11882907 - 11891834
8928
ENSAPLT00000040959
11883005 - 11891834
8830