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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11887504_11891632_R

Intron Information:

Intron Rank:
147179
Intron Class:
major
Intron Phase:
Intron Coordinates:
11887504 - 11891632
Intron Length:
4129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTCTCA
5'SS Class:
major
3'SS Sequence:
CCTGTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CTCCCCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
61.4
40.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.4
0.71
0.8
72.6
37.6
Minor 5ss
42.8
-0.8
3.1
57
47.2
Minor BPS
57.4
0.31
1.6
71.81
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026496
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048220
11882246 - 11897609
15364
ENSAPLT00000043074
11882907 - 11891834
8928
ENSAPLT00000040959
11883005 - 11891834
8830