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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11967853_11968702_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11967853 - 11968702
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TTTGAGTTAAAA
Flanking Amino Acid:
STVQVFEATIRVLGSLLSAH
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
68.8
42.3
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
77.6
0.62
0.8
73.4
30.2
Minor 5ss
40.7
-1
2.8
53.3
43.8
Minor BPS
48.5
-0.1
2.4
69.52
42.5

Associated Gene:

Gene:
EDEM1
Ensembl Gene ID:
ENSAPLG00000027743
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041739
11965406 - 11973196
7791