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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11968807_11971648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11968807 - 11971648
Intron Length:
2842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTATAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
TLIDALDTLAVMGNSSEFQK
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
63.3
0.3
1.1
64.8
39.3
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
EDEM1
Ensembl Gene ID:
ENSAPLG00000027743
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041739
11965406 - 11973196
7791