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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11971722_11972804_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11971722 - 11972804
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGGAGA
5'SS Class:
weak_major
3'SS Sequence:
GTTTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTGTGTTTATTT
Flanking Amino Acid:
CCGRGPDRDDPTNLNINDVL
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.3
57
43.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.6
0.8
0.8
77.1
41.6
Minor 5ss
28
-2.5
3
35.1
41.5
Minor BPS
48.6
-0
2
66.59
45.3

Associated Gene:

Gene:
EDEM1
Ensembl Gene ID:
ENSAPLG00000027743
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041739
11965406 - 11973196
7791