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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11978738_11980145_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11978738 - 11980145
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
AACACTTGAATA
Flanking Amino Acid:
SISCKEKDNIDITLQWLIQH
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
62.4
0.31
1
64
32.1
Major PPT
86.8
0.83
0.7
84.7
23
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
51.1
0.03
1.4
56.52
36.6

Associated Gene:

Gene:
ARL8B
Ensembl Gene ID:
ENSAPLG00000016295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017001
11978688 - 11992139
13452