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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11980217_11980451_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11980217 - 11980451
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTGTGTTTAAAT
Flanking Amino Acid:
ALDEKQLIEKMNLAAIQDRE
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.1
0.7
0.8
76.7
31.9
Minor 5ss
40.2
-1.1
3.1
54.8
42.5
Minor BPS
56.8
0.29
1.9
73.65
43.2

Associated Gene:

Gene:
ARL8B
Ensembl Gene ID:
ENSAPLG00000016295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017001
11978688 - 11992139
13452