Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11980520_11981077_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11980520 - 11981077

Intron Length:

558

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

ATTTGGATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTTCTGATTT

Flanking Amino Acid:

LDKPQLQGIPVLVLGNKRDL

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

75.5

0.57

70.9

43.7

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

57.1

0.3

1.7

75.98

41.3

Associated Gene:

Gene:

ARL8B

Ensembl Gene ID:

ENSAPLG00000016295

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017001

11978688 - 11992139

13452