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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11981667_11982309_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11981667 - 11982309
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCACTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAA
U12 Branch Point Sequence:
TTTCCTTCCACT
Flanking Amino Acid:
KVTKGNVTIKIWDIGGQPRF
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
52.4
0.06
1.3
55.6
40.2
Major PPT
66.3
0.37
1
68.8
30.5
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
56.8
0.29
2
81.65
39.9

Associated Gene:

Gene:
ARL8B
Ensembl Gene ID:
ENSAPLG00000016295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017001
11978688 - 11992139
13452