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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_11982391_11990378_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11982391 - 11990378
Intron Length:
7988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
GKTTFVNVIASGQFSEDMIP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
55.1
43.9
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
23.7
-3
3.3
29.1
43.5
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
ARL8B
Ensembl Gene ID:
ENSAPLG00000016295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017001
11978688 - 11992139
13452