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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12060751_12065009_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12060751 - 12065009
Intron Length:
4259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AACTTTTTGATT
Flanking Amino Acid:
SGQLSELKDQMTEQRKQKQR
Intron Amino Acid Position:
2636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.5
0.8
0.8
77.1
41.6
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
60.4
0.41
1.2
68.69
36.7

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493