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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12075958_12076623_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12075958 - 12076623
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GTCACTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AGAGTTATAAAT
Flanking Amino Acid:
EILKTTCFICGLERDKFDNK
Intron Amino Acid Position:
2528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72
0.5
0.9
65.8
35.8
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
45
-0.3
1.7
57.8
38.6

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493