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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12080128_12081492_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12080128 - 12081492
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAGC
5'SS Class:
major
3'SS Sequence:
CTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATTATTTGACT
Flanking Amino Acid:
DKLPNETLLPDRTEPGETMT
Intron Amino Acid Position:
2392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
68.3
42.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.7
0.8
0.7
84.6
30.3
Minor 5ss
31
-2.2
2.8
37.5
39.9
Minor BPS
65.9
0.58
1.5
79.31
36.3

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493