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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12082197_12083465_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12082197 - 12083465
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTATGATTAATC
Flanking Amino Acid:
PTLFLLGAFNVCNKIIFLMS
Intron Amino Acid Position:
2272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
84.6
0.86
1
74
41.2
Major PPT
72.4
0.5
0.8
70.5
35.2
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
57.9
0.23
2
72.44
38.7

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493