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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12091748_12092751_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12091748 - 12092751
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATTG
5'SS Class:
major
3'SS Sequence:
TCCTTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTCCTTTATTT
Flanking Amino Acid:
GHNIYILAHQLARHNKELQN
Intron Amino Acid Position:
2073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.8
40.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.2
0.72
0.7
81.3
29.1
Minor 5ss
39.5
-1.2
3.5
55.2
49
Minor BPS
64.2
0.52
1.5
79.64
36.6

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493