About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12093688_12095005_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12093688 - 12095005
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTCCAT
U12 Branch Point Sequence:
CATGCAGTGACT
Flanking Amino Acid:
KRMDLVLELKNNASKLLLAI
Intron Amino Acid Position:
2000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
82.6
33.6
Major BPS
55.9
0.15
1.3
66.4
39.9
Major PPT
79.2
0.66
0.7
77
25
Minor 5ss
21.7
-3.3
3.8
30.8
43.1
Minor BPS
44.8
-0.3
2.3
64.86
45.6

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493