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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12102992_12123579_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12102992 - 12123579
Intron Length:
20588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
CTCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
AGATATCTACCC
Flanking Amino Acid:
PQRQLEDHRRHSFFCRLTED
Intron Amino Acid Position:
1751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
43
-0.5
2
52.29
38.4

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493