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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12102992_12138899_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12102992 - 12138899
Intron Length:
35908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
AGATATCTACCC
Flanking Amino Acid:
MTKDRGYGEKHSFFCRLTED
Intron Amino Acid Position:
1728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
43
-0.5
2
52.29
38.4

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493