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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12113_12330_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12113 - 12330
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TCTGGATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTCTCTGGATT
Flanking Amino Acid:
YKALTPDILPNSDCESIAVL
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.5
37.2
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
75.8
0.58
1
65.7
44.5
Minor 5ss
39.7
-1.2
3
51.9
39.9
Minor BPS
62.5
0.47
1.4
80.89
34.5

Associated Gene:

Gene:
OVCH2
Ensembl Gene ID:
ENSAPLG00000004207
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004323
10484 - 20591
10108