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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12135385_12138899_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12135385 - 12138899
Intron Length:
3515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTGCTTTCAATT
Flanking Amino Acid:
MTKDRGYGEKITIELDNAEL
Intron Amino Acid Position:
1714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
81.4
0.71
0.8
78.5
28.8
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
57.1
0.3
1.5
72.83
38.8

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493