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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12139012_12139947_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12139012 - 12139947
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
TGCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TAGTACTAAAAT
Flanking Amino Acid:
RKCESGGFICKLIKHTKQLL
Intron Amino Acid Position:
1676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
51.6
0.13
2
71.64
44.6

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493