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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12140972_12141605_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12140972 - 12141605
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTTACTAATT
Flanking Amino Acid:
ESCIRVLSDVAKSRAIAIPV
Intron Amino Acid Position:
1565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.6
0.71
0.9
76.5
37.5
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
54.4
0.22
1.9
77.25
39.5

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493