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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12145594_12146307_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12145594 - 12146307
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAATGATT
5'SS Class:
major
3'SS Sequence:
AATTACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAACC
Flanking Amino Acid:
FENFLVDICRACNNTSDRKH
Intron Amino Acid Position:
1482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
75.3
40.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75
0.56
0.9
67.1
39.1
Minor 5ss
37.8
-1.4
3.3
49.5
46.5
Minor BPS
73.4
0.71
1.4
80
34.3

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493