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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12146434_12146957_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12146434 - 12146957
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCTCCACT
Flanking Amino Acid:
VVTHEDCIPEVKIAYINFLN
Intron Amino Acid Position:
1440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77
0.61
0.8
74.2
29.7
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
64
0.52
2
87.74
37.8

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493