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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12151090_12151984_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12151090 - 12151984
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAGTTCTAAAGC
Flanking Amino Acid:
SSYNYRVVKEILLRLSKLCV
Intron Amino Acid Position:
1201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.5
0.71
0.8
73.1
37.3
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
47.3
-0.2
2
54.16
44.2

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493