About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12152051_12153517_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12152051 - 12153517
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATCC
Flanking Amino Acid:
QGENEHKKKEEGHSKSQKPE
Intron Amino Acid Position:
1179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
69
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.7
81
29.9
Minor 5ss
32.2
-2
3.1
41.1
45.2
Minor BPS
59.7
0.28
1.6
67.32
38.3

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493