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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12157152_12158618_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12157152 - 12158618
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGCA
5'SS Class:
major
3'SS Sequence:
TCTGTATCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
GTTCCTGCAACA
Flanking Amino Acid:
TKLKIIEILQFILNVRLDYR
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
63.3
34.8
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
66.9
0.38
0.9
60.2
40.6
Minor 5ss
36.9
-1.5
3.3
48.6
47
Minor BPS
48.1
-0.1
2.2
65.91
40.4

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493