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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12158807_12159130_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12158807 - 12159130
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TACCTCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAC
U12 Branch Point Sequence:
GTTTACCTACCT
Flanking Amino Acid:
TKMAKGEESKGSNVMRSIHG
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
65.3
0.38
1.1
66.2
36.5
Major PPT
67.7
0.4
1
67.9
32.1
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
51.8
0.14
2.1
78.85
42.7

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493