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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12160345_12161694_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12160345 - 12161694
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCCCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAG
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
SEIPSEIAIDDYDSSGTSKD
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
55.4
0.13
1.6
63.6
42.5
Major PPT
87.4
0.84
0.6
85.2
22.1
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493