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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12163415_12164678_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12163415 - 12164678
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTAATCTAACC
Flanking Amino Acid:
PANADILIETKLVLSRFEFE
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76
0.58
1
73
37.2
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
49.7
-0
1.9
66.01
38.9

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493