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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12164799_12165060_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12164799 - 12165060
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
TTTGGCTTACGT
Flanking Amino Acid:
VSLVRKNREPRFLDYLSDLC
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
74.8
0.56
0.9
70.1
35.3
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
48.1
-0
2.4
75
47.8

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493