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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12165971_12166348_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12165971 - 12166348
Intron Length:
378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTGC
5'SS Class:
major
3'SS Sequence:
CATAAATCCATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAAT
Flanking Amino Acid:
LMREQNILKQIFKLLQAPFT
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
58.1
42.1
Major BPS
100
1.24
0.5
100
0
Major PPT
59
0.2
0.9
50.9
37.6
Minor 5ss
35
-1.7
3.6
49.7
46.9
Minor BPS
70
0.71
1.7
90.16
33.1

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493