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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12174969_12175438_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12174969 - 12175438
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGTTTTATTT
Flanking Amino Acid:
QLVDNPGCNEVNSVNCNTSW
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
91
0.92
0.6
89
20
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
54.8
0.23
1.6
71.82
40.2

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493
ENSAPLT00000017097
12060664 - 12212156
151493
ENSAPLT00000024655
12060664 - 12212156
151493