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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12208208_12211998_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12208208 - 12211998
Intron Length:
3791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTCACTTTATT
Flanking Amino Acid:
GSTNGFISTLGLVDDRCVVQ
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
75.1
0.62
1
65.6
41
Major PPT
85.9
0.81
0.8
80.4
31.5
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
55.1
0.24
1.8
74.57
42

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017097
12060664 - 12212156
151493