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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12210590_12211998_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12210590 - 12211998
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TGATCTATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TGCACCATGATC
Flanking Amino Acid:
GSTNGFISTLGKEKKIWDAA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
72.3
39
Major BPS
62
0.3
1
53
34.1
Major PPT
72.4
0.5
0.9
66.3
39.3
Minor 5ss
32.1
-2
3
32.8
41.8
Minor BPS
49.8
-0
1.7
60.27
39

Associated Gene:

Gene:
ITPR1
Ensembl Gene ID:
ENSAPLG00000016350
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024655
12060664 - 12212156
151493
ENSAPLT00000022171
12060664 - 12212156
151493
ENSAPLT00000018946
12060664 - 12212156
151493