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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12226740_12236848_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12226740 - 12236848
Intron Length:
10109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
TTCAGGTGATCT
Flanking Amino Acid:
FVNATGYLTEVAAAPWWLPV
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
83.8
0.76
0.8
80.8
31.1
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
38.9
-0.7
2.5
61.14
48.2

Associated Gene:

Gene:
SUMF1
Ensembl Gene ID:
ENSAPLG00000003538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040186
12224832 - 12247570
22739