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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12226817_12238703_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12226817 - 12238703
Intron Length:
11887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAGGCCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTGTGCTGACGA
Flanking Amino Acid:
GKIHTKAYPFLMDHPVLHVS
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.2
51.9
44.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
41.7
-0.9
3.4
63
42.6
Minor BPS
43.7
-0.4
2.3
59.56
46.3

Associated Gene:

Gene:
SUMF1
Ensembl Gene ID:
ENSAPLG00000003538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028444
12226566 - 12247570
21005