About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_12227433_12238587_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12227433 - 12238587
Intron Length:
11155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAAGTCT
5'SS Class:
major
3'SS Sequence:
GCGAGGCTGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCGTAAC
U12 Branch Point Sequence:
CTGGCTGGAGCA
Flanking Amino Acid:
FVFEGMLSEELPHSALWPAL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1
65.3
34.8
Major BPS
61.9
0.3
1.2
63.6
40.3
Major PPT
41.8
-0.4
1.7
38.6
44.5
Minor 5ss
35
-1.7
3.4
47.5
42.7
Minor BPS
38.5
-0.8
2.2
47.13
43.5

Associated Gene:

Gene:
SUMF1
Ensembl Gene ID:
ENSAPLG00000003538
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029392
12222389 - 12247570
25182